diff --git a/Perspex.Controls/Menu.cs b/Perspex.Controls/Menu.cs
index 924e8b4cec..982b550d89 100644
--- a/Perspex.Controls/Menu.cs
+++ b/Perspex.Controls/Menu.cs
@@ -132,16 +132,6 @@ namespace Perspex.Controls
             this.subscription.Dispose();
         }
 
-        /// <summary>
-        /// Called when the <see cref="Menu"/> loses focus.
-        /// </summary>
-        /// <param name="e">The event args.</param>
-        protected override void OnLostFocus(RoutedEventArgs e)
-        {
-            base.OnLostFocus(e);
-            //this.Close();
-        }
-
         /// <summary>
         /// Called when a key is pressed within the menu.
         /// </summary>
@@ -205,6 +195,8 @@ namespace Perspex.Controls
         private void OnMenuClick(RoutedEventArgs e)
         {
             this.Close();
+            FocusManager.Instance.Focus(null);
+            e.Handled = true;
         }
 
         /// <summary>
diff --git a/Perspex.Controls/PopupRoot.cs b/Perspex.Controls/PopupRoot.cs
index aaf7cbe948..01f1d318fb 100644
--- a/Perspex.Controls/PopupRoot.cs
+++ b/Perspex.Controls/PopupRoot.cs
@@ -11,11 +11,12 @@ namespace Perspex.Controls
     using Perspex.Media;
     using Perspex.Platform;
     using Splat;
+    using Perspex.VisualTree;
 
     /// <summary>
     /// The root window of a <see cref="Popup"/>.
     /// </summary>
-    public class PopupRoot : TopLevel, IInteractive
+    public class PopupRoot : TopLevel, IInteractive, IHostedVisualTreeRoot
     {
         /// <summary>
         /// Initializes static members of the <see cref="PopupRoot"/> class.
@@ -64,6 +65,14 @@ namespace Perspex.Controls
             get { return this.Parent; }
         }
 
+        /// <summary>
+        /// Gets the control that is hosting the popup root.
+        /// </summary>
+        IVisual IHostedVisualTreeRoot.Host
+        {
+            get { return this.Parent; }
+        }
+
         /// <summary>
         /// Sets the position of the popup in screen coordinates.
         /// </summary>
diff --git a/Perspex.Input/FocusManager.cs b/Perspex.Input/FocusManager.cs
index 9f2a6db517..8d47ec6bf9 100644
--- a/Perspex.Input/FocusManager.cs
+++ b/Perspex.Input/FocusManager.cs
@@ -59,19 +59,29 @@ namespace Perspex.Input
         {
             if (control != null)
             {
-                var scope = control.GetSelfAndVisualAncestors()
-                    .OfType<IFocusScope>()
-                    .FirstOrDefault() ?? this.Scope;
+                var scope = GetFocusScopeAncestors(control)
+                    .FirstOrDefault();
 
                 if (scope != null)
                 {
                     this.Scope = scope;
                     this.SetFocusedElement(scope, control, keyboardNavigated);
+                    System.Diagnostics.Debug.WriteLine("Focused " + control.GetType().Name);
                 }
             }
-            else
+            else if (this.Current != null)
             {
-                this.SetFocusedElement(this.Scope, null);
+                // If control is null, set focus to the topmost focus scope.
+                foreach (var scope in GetFocusScopeAncestors(this.Current).Reverse().ToList())
+                {
+                    IInputElement element;
+
+                    if (this.focusScopes.TryGetValue(scope, out element))
+                    {
+                        this.Focus(element, keyboardNavigated);
+                        break;
+                    }
+                }
             }
         }
 
@@ -124,5 +134,26 @@ namespace Perspex.Input
             this.Scope = scope;
             this.Focus(e);
         }
+
+        /// <summary>
+        /// Gets the focus scope ancestors of the specified control, traversing popups.
+        /// </summary>
+        /// <param name="control">The control.</param>
+        /// <returns>The focus scopes.</returns>
+        private static IEnumerable<IFocusScope> GetFocusScopeAncestors(IInputElement control)
+        {
+            while (control != null)
+            {
+                var scope = control as IFocusScope;
+
+                if (scope != null)
+                {
+                    yield return scope;
+                }
+
+                control = control.GetVisualParent<IInputElement>() ?? 
+                    ((control as IHostedVisualTreeRoot)?.Host as IInputElement);
+            }
+        }
     }
 }
diff --git a/Perspex.Input/MouseDevice.cs b/Perspex.Input/MouseDevice.cs
index e1102598a3..63f2dffae3 100644
--- a/Perspex.Input/MouseDevice.cs
+++ b/Perspex.Input/MouseDevice.cs
@@ -143,7 +143,7 @@ namespace Perspex.Input
 
                 IInputElement focusable = this.GetFocusable(hit);
 
-                if (focusable != null && focusable.Focusable)
+                if (focusable != null && focusable.Focusable && focusable.IsEffectivelyVisible)
                 {
                     focusable.Focus();
                 }
diff --git a/Perspex.SceneGraph/Perspex.SceneGraph.csproj b/Perspex.SceneGraph/Perspex.SceneGraph.csproj
index 064cbc5a20..2026a0eabd 100644
--- a/Perspex.SceneGraph/Perspex.SceneGraph.csproj
+++ b/Perspex.SceneGraph/Perspex.SceneGraph.csproj
@@ -101,6 +101,7 @@
     <Compile Include="Thickness.cs" />
     <Compile Include="Vector.cs" />
     <Compile Include="Visual.cs" />
+    <Compile Include="VisualTree\IHostedVisualTreeRoot.cs" />
     <Compile Include="VisualTree\IVisualTreeHost.cs" />
     <Compile Include="VisualTree\TransformedBounds.cs" />
     <Compile Include="VisualTree\BoundsTracker.cs" />
diff --git a/Perspex.SceneGraph/VisualTree/IHostedVisualTreeRoot.cs b/Perspex.SceneGraph/VisualTree/IHostedVisualTreeRoot.cs
new file mode 100644
index 0000000000..e76ae5ebde
--- /dev/null
+++ b/Perspex.SceneGraph/VisualTree/IHostedVisualTreeRoot.cs
@@ -0,0 +1,22 @@
+// -----------------------------------------------------------------------
+// <copyright file="IVisualTreeHost.cs" company="Steven Kirk">
+// Copyright 2015 MIT Licence. See licence.md for more information.
+// </copyright>
+// -----------------------------------------------------------------------
+
+namespace Perspex.VisualTree
+{
+    /// <summary>
+    /// Interface for controls that are at the root of a hosted visual tree, such as popups.
+    /// </summary>
+    public interface IHostedVisualTreeRoot
+    {
+        /// <summary>
+        /// Gets the visual tree host.
+        /// </summary>
+        /// <value>
+        /// The visual tree host.
+        /// </value>
+        IVisual Host { get; }
+    }
+}