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Forgot to add the Permutation class.

pull/36/head
Jurgen Van Gael 16 years ago
committed by Christoph Ruegg
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6242f534fd
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8d4c4c4792
3 changed files with 332 additions and 171 deletions
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  1. 211
      src/Numerics/Permutation.cs
  2. 171
      src/UnitTests/LinearAlgebraTests/Double/Factorization/LUTests.cs
  3. 121
      src/UnitTests/PermutationTest.cs

211
src/Numerics/Permutation.cs
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@ -0,0 +1,211 @@
// <copyright file="Permutation.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://numerics.mathdotnet.com
// http://github.com/mathnet/mathnet-numerics
// http://mathnetnumerics.codeplex.com
//
// Copyright (c) 2009-2010 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics
{
using System;
using System.Collections.Generic;
using System.Numerics;
using System.Runtime;
using System.Runtime.InteropServices;
using System.Text;
using Properties;
/// <summary>
/// Class to represent a permutation for a subset of the natural numbers.
/// </summary>
#if !SILVERLIGHT
[Serializable]
#endif
public class Permutation
{
#region fields
/// <summary>
/// Entry mIndices[i] represents the location to which i is permuted to.
/// </summary>
private static int[] mIndices;
#endregion fields
#region Constructor
/// <summary>
/// Initializes a new instance of the Permutation structure.
/// </summary>
/// <param name="indices">An array which represents where each integer is permuted too: indices[i] represents that integer i
/// is permuted to location indices[i].</param>
public Permutation(int[] indices)
{
if (!CheckForProperPermutation(indices))
{
throw new ArgumentException(Resources.PermutationAsIntArrayInvalid, "indices");
}
mIndices = (int[]) indices.Clone();
}
#endregion
/// <summary>
/// The number of elements this permutation is over.
/// </summary>
public int Dimension
{
get { return mIndices.Length; }
}
/// <summary>
/// Computes where <paramref name="idx"/> permutes too.
/// </summary>
/// <param name="idx">The index to permute from.</param>
/// <returns>The index which is permuted to.</returns>
public int this[int idx]
{
get
{
return mIndices[idx];
}
}
/// <summary>
/// Computes the inverse of the permutation.
/// </summary>
/// <returns></returns>
public Permutation Inverse()
{
var invIdx = new int[Dimension];
for (int i = 0; i < Dimension; i++)
{
invIdx[this[i]] = i;
}
return new Permutation(invIdx);
}
/// <summary>
/// Construct an array from a sequence of inversions.
/// </summary>
/// <example>
/// From wikipedia: the permutation 12043 has the inversions (0,2), (1,2) and (3,4). This would be
/// encoded using the array [22244].
/// </example>
/// <param name="inv">The set of inversions to contruct the permutation from.</param>
/// <returns>A permutation generated from a sequence of inversions.</returns>
public static Permutation FromInversions(int[] inv)
{
var idx = new int[inv.Length];
for (int i = 0; i < inv.Length; i++)
{
idx[i] = i;
}
for (int i = inv.Length-1; i >= 0; i--)
{
if (idx[i] != inv[i])
{
int t = idx[i];
idx[i] = idx[inv[i]];
idx[inv[i]] = t;
}
}
return new Permutation(idx);
}
/// <summary>
/// Construct a sequence of inversions from the permutation.
/// </summary>
/// <example>
/// From wikipedia: the permutation 12043 has the inversions (0,2), (1,2) and (3,4). This would be
/// encoded using the array [22244].
/// </example>
/// <returns>A sequence of inversions.</returns>
public int[] ToInversions()
{
var idx = (int[])mIndices.Clone();
for (int i = 0; i < Dimension; i++)
{
if (idx[i] != i)
{
#if !SILVERLIGHT
int q = Array.FindIndex(idx, i + 1, x => x == i);
#else
int q = -1;
for(int j = i+1; j < Dimension; j++)
{
if(idx[j] == i)
{
q = j;
break;
}
}
#endif
var t = idx[i];
idx[i] = q;
idx[q] = t;
}
}
return idx;
}
/// <summary>
/// Checks whether the <paramref name="indices"/> array represents a proper permutation.
/// </summary>
/// <param name="indices">An array which represents where each integer is permuted too: indices[i] represents that integer i
/// is permuted to location indices[i].</param>
/// <returns>True if <paramref name="indices"/> represents a proper permutation, false otherwise.</returns>
static private bool CheckForProperPermutation(int[] indices)
{
var idxCheck = new bool[indices.Length];
for (int i = 0; i < indices.Length; i++)
{
if (indices[i] >= indices.Length || indices[i] < 0)
{
return false;
}
idxCheck[indices[i]] = true;
}
for (int i = 0; i < indices.Length; i++)
{
if (idxCheck[i] == false)
{
return false;
}
}
return true;
}
}
}

171
src/UnitTests/LinearAlgebraTests/Double/Factorization/LUTests.cs
View File

@ -158,176 +158,5 @@ namespace MathNet.Numerics.UnitTests.LinearAlgebraTests.Double.Factorization
}
}
}
/*[Test]
[Row(1)]
[Row(2)]
[Row(5)]
[Row(10)]
[Row(50)]
[Row(100)]
[MultipleAsserts]
public void CanSolveForRandomVector(int order)
{
var A = MatrixLoader.GenerateRandomPositiveDefiniteMatrix(order);
var ACopy = A.Clone();
var chol = A.Cholesky();
var b = MatrixLoader.GenerateRandomVector(order);
var x = chol.Solve(b);
Assert.AreEqual(b.Count, x.Count);
var bReconstruct = A * x;
// Check the reconstruction.
for (int i = 0; i < order; i++)
{
Assert.AreApproximatelyEqual(b[i], bReconstruct[i], 1.0e-11);
}
// Make sure A didn't change.
for (int i = 0; i < A.RowCount; i++)
{
for (int j = 0; j < A.ColumnCount; j++)
{
Assert.AreEqual(ACopy[i, j], A[i, j]);
}
}
}
[Test]
[Row(1,1)]
[Row(2,4)]
[Row(5,8)]
[Row(10,3)]
[Row(50,10)]
[Row(100,100)]
[MultipleAsserts]
public void CanSolveForRandomMatrix(int row, int col)
{
var A = MatrixLoader.GenerateRandomPositiveDefiniteMatrix(row);
var ACopy = A.Clone();
var chol = A.Cholesky();
var B = MatrixLoader.GenerateRandomMatrix(row, col);
var X = chol.Solve(B);
Assert.AreEqual(B.RowCount, X.RowCount);
Assert.AreEqual(B.ColumnCount, X.ColumnCount);
var BReconstruct = A * X;
// Check the reconstruction.
for (int i = 0; i < B.RowCount; i++)
{
for (int j = 0; j < B.ColumnCount; j++)
{
Assert.AreApproximatelyEqual(B[i, j], BReconstruct[i, j], 1.0e-11);
}
}
// Make sure A didn't change.
for (int i = 0; i < A.RowCount; i++)
{
for (int j = 0; j < A.ColumnCount; j++)
{
Assert.AreEqual(ACopy[i, j], A[i, j]);
}
}
}
[Test]
[Row(1)]
[Row(2)]
[Row(5)]
[Row(10)]
[Row(50)]
[Row(100)]
[MultipleAsserts]
public void CanSolveForRandomVectorWhenResultVectorGiven(int order)
{
var A = MatrixLoader.GenerateRandomPositiveDefiniteMatrix(order);
var ACopy = A.Clone();
var chol = A.Cholesky();
var b = MatrixLoader.GenerateRandomVector(order);
var bCopy = b.Clone();
var x = new DenseVector(order);
chol.Solve(b, x);
Assert.AreEqual(b.Count, x.Count);
var bReconstruct = A * x;
// Check the reconstruction.
for (int i = 0; i < order; i++)
{
Assert.AreApproximatelyEqual(b[i], bReconstruct[i], 1.0e-11);
}
// Make sure A didn't change.
for (int i = 0; i < A.RowCount; i++)
{
for (int j = 0; j < A.ColumnCount; j++)
{
Assert.AreEqual(ACopy[i, j], A[i, j]);
}
}
// Make sure b didn't change.
for (int i = 0; i < order; i++)
{
Assert.AreEqual(bCopy[i], b[i]);
}
}
[Test]
[Row(1, 1)]
[Row(2, 4)]
[Row(5, 8)]
[Row(10, 3)]
[Row(50, 10)]
[Row(100, 100)]
[MultipleAsserts]
public void CanSolveForRandomMatrixWhenResultMatrixGiven(int row, int col)
{
var A = MatrixLoader.GenerateRandomPositiveDefiniteMatrix(row);
var ACopy = A.Clone();
var chol = A.Cholesky();
var B = MatrixLoader.GenerateRandomMatrix(row, col);
var BCopy = B.Clone();
var X = new DenseMatrix(row, col);
chol.Solve(B, X);
Assert.AreEqual(B.RowCount, X.RowCount);
Assert.AreEqual(B.ColumnCount, X.ColumnCount);
var BReconstruct = A * X;
// Check the reconstruction.
for (int i = 0; i < B.RowCount; i++)
{
for (int j = 0; j < B.ColumnCount; j++)
{
Assert.AreApproximatelyEqual(B[i, j], BReconstruct[i, j], 1.0e-11);
}
}
// Make sure A didn't change.
for (int i = 0; i < A.RowCount; i++)
{
for (int j = 0; j < A.ColumnCount; j++)
{
Assert.AreEqual(ACopy[i, j], A[i, j]);
}
}
// Make sure B didn't change.
for (int i = 0; i < B.RowCount; i++)
{
for (int j = 0; j < B.ColumnCount; j++)
{
Assert.AreEqual(BCopy[i, j], B[i, j]);
}
}
}*/
}
}

121
src/UnitTests/PermutationTest.cs
View File

@ -0,0 +1,121 @@
// <copyright file="TrigonometryTest.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://numerics.mathdotnet.com
// http://github.com/mathnet/mathnet-numerics
// http://mathnetnumerics.codeplex.com
//
// Copyright (c) 2009-2010 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.UnitTests
{
using System;
using System.Numerics;
using MbUnit.Framework;
[TestFixture]
public class PermutationTest
{
[Test]
[Row(new int[] { 0 })]
[Row(new int[] { 0, 1, 2, 3, 4, 5 })]
[Row(new int[] { 5, 4, 3, 2, 1, 0 })]
[Row(new int[] { 0, 4, 3, 2, 1, 5 })]
[Row(new int[] { 0, 3, 2, 1, 4, 5 })]
public void CanCreatePermutation(int[] idx)
{
var p = new Permutation(idx);
}
[Test]
[Row(new int[] { -1 })]
[Row(new int[] { 0, 1, 2, 3, 4, 4 })]
[Row(new int[] { 5, 4, 3, 2, 1, 7 })]
[ExpectedArgumentException]
public void CreatePermutationFailsWhenGivenBadIndexSet(int[] idx)
{
var p = new Permutation(idx);
}
[Test]
[Row(new int[] { 0 })]
[Row(new int[] { 0, 1, 2, 3, 4, 5 })]
[Row(new int[] { 5, 4, 3, 2, 1, 0 })]
[Row(new int[] { 0, 4, 3, 2, 1, 5 })]
[Row(new int[] { 0, 3, 2, 1, 4, 5 })]
[MultipleAsserts]
public void CanInvertPermutation(int[] idx)
{
var p = new Permutation(idx);
var pinv = p.Inverse();
Assert.AreEqual(p.Dimension, pinv.Dimension);
for (int i = 0; i < p.Dimension; i++)
{
Assert.AreEqual(i, pinv[p[i]]);
Assert.AreEqual(i, p[pinv[i]]);
}
}
[Test]
[Row(new int[] { 0 }, new int[] { 0 })]
[Row(new int[] { 0, 1, 2, 3, 4, 5 }, new int[] { 0, 1, 2, 3, 4, 5 })]
[Row(new int[] { 5, 4, 3, 3, 4, 5 }, new int[] { 5, 4, 3, 2, 1, 0 })]
[Row(new int[] { 0, 4, 3, 3, 4, 5 }, new int[] { 0, 4, 3, 2, 1, 5 })]
[Row(new int[] { 0, 3, 2, 3, 4, 5 }, new int[] { 0, 3, 2, 1, 4, 5 })]
[Row(new int[] { 2, 2, 2, 4, 4 }, new int[] { 1, 2, 0, 4, 3 })]
[MultipleAsserts]
public void CanCreatePermutationFromInversions(int[] inv, int[] idx)
{
var p = Permutation.FromInversions(inv);
var q = new Permutation(idx);
Assert.AreEqual(q.Dimension, p.Dimension);
for (int i = 0; i < q.Dimension; i++)
{
Assert.AreEqual(q[i], p[i]);
}
}
[Test]
[Row(new int[] { 0 }, new int[] { 0 })]
[Row(new int[] { 0, 1, 2, 3, 4, 5 }, new int[] { 0, 1, 2, 3, 4, 5 })]
[Row(new int[] { 5, 4, 3, 3, 4, 5 }, new int[] { 5, 4, 3, 2, 1, 0 })]
[Row(new int[] { 0, 4, 3, 3, 4, 5 }, new int[] { 0, 4, 3, 2, 1, 5 })]
[Row(new int[] { 0, 3, 2, 3, 4, 5 }, new int[] { 0, 3, 2, 1, 4, 5 })]
[Row(new int[] { 2, 2, 2, 4, 4 }, new int[] { 1, 2, 0, 4, 3 })]
[MultipleAsserts]
public void CanCreateInversionsFromPermutation(int[] inv, int[] idx)
{
var q = new Permutation(idx);
var p = q.ToInversions();
Assert.AreEqual(inv.Length, p.Length);
for (int i = 0; i < q.Dimension; i++)
{
Assert.AreEqual(inv[i], p[i]);
}
}
}
}
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