//
// Math.NET Numerics, part of the Math.NET Project
// http://numerics.mathdotnet.com
// http://github.com/mathnet/mathnet-numerics
// http://mathnetnumerics.codeplex.com
//
// Copyright (c) 2009-2010 Math.NET
//
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// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
//
namespace MathNet.Numerics.Statistics
{
using System;
using System.Collections.Generic;
///
/// Computes the basic statistics of data set. The class meets the
/// NIST standard of accuracy for mean, variance, and standard deviation
/// (the only statistics they provide exact values for) and exceeds them
/// in increased accuracy mode.
///
public class DescriptiveStatistics
{
///
/// Initializes a new instance of the class.
///
/// The sample data.
public DescriptiveStatistics(IEnumerable data)
: this(data, false)
{
}
///
/// Initializes a new instance of the class.
///
/// The sample data.
public DescriptiveStatistics(IEnumerable data)
: this(data, false)
{
}
///
/// Initializes a new instance of the class.
///
/// The sample data.
///
/// If set to true, increased accuracy mode used.
/// Increased accuracy mode uses types for internal calculations.
///
///
/// Don't use increased accuracy for data sets containing large values (in absolute value).
/// This may cause the calculations to overflow.
///
public DescriptiveStatistics(IEnumerable data, bool increasedAccuracy)
{
if (data == null)
{
throw new ArgumentNullException("data");
}
if (increasedAccuracy)
{
ComputeHA(data);
}
else
{
Compute(data);
}
Median = data.Median();
}
///
/// Initializes a new instance of the class.
///
/// The sample data.
///
/// If set to true, increased accuracy mode used.
/// Increased accuracy mode uses types for internal calculations.
///
///
/// Don't use increased accuracy for data sets containing large values (in absolute value).
/// This may cause the calculations to overflow.
///
public DescriptiveStatistics(IEnumerable data, bool increasedAccuracy)
{
if (data == null)
{
throw new ArgumentNullException("data");
}
if (increasedAccuracy)
{
ComputeHA(data);
}
else
{
Compute(data);
}
Median = data.Median();
}
///
/// Gets the size of the sample.
///
/// The size of the sample.
public int Count { get; private set; }
///
/// Gets the sample mean.
///
/// The sample mean.
public double Mean { get; private set; }
///
/// Gets the sample variance.
///
/// The sample variance.
public double Variance { get; private set; }
///
/// Gets the sample standard deviation.
///
/// The sample standard deviation.
public double StandardDeviation { get; private set; }
///
/// Gets the sample skewness.
///
/// The sample skewness.
/// Returns zero if is less than three.
public double Skewness { get; private set; }
///
/// Gets the sample median.
///
/// The sample median.
public double Median { get; private set; }
///
/// Gets the sample kurtosis.
///
/// The sample kurtosis.
/// Returns zero if is less than four.
public double Kurtosis { get; private set; }
///
/// Gets the maximum sample value.
///
/// The maximum sample value.
public double Maximum { get; private set; }
///
/// Gets the minimum sample value.
///
/// The minimum sample value.
public double Minimum { get; private set; }
///
/// Computes descriptive statistics from a stream of data values.
///
/// A sequence of datapoints.
private void Compute(IEnumerable data)
{
double mean = 0;
double variance = 0;
double skewness = 0;
double kurtosis = 0;
double minimum = Double.PositiveInfinity;
double maximum = Double.NegativeInfinity;
int n = 0;
foreach (var xi in data)
{
double delta = xi - mean;
double scaleDelta = delta / ++n;
double scaleDeltaSQR = scaleDelta * scaleDelta;
double tmpDelta = delta * (n - 1);
mean += scaleDelta;
kurtosis += tmpDelta * scaleDelta * scaleDeltaSQR * (n * n - 3 * n + 3)
+ 6 * scaleDeltaSQR * variance - 4 * scaleDelta * skewness;
skewness += tmpDelta * scaleDeltaSQR * (n - 2) - 3 * scaleDelta * variance;
variance += tmpDelta * scaleDelta;
if (minimum > xi) { minimum = xi; }
if (maximum < xi) { maximum = xi; }
}
SetStatistics(mean, variance, skewness, kurtosis, minimum, maximum, n);
}
///
/// Computes descriptive statistics from a stream of nullable data values.
///
/// A sequence of datapoints.
private void Compute(IEnumerable data)
{
double mean = 0;
double variance = 0;
double skewness = 0;
double kurtosis = 0;
double minimum = Double.PositiveInfinity;
double maximum = Double.NegativeInfinity;
int n = 0;
foreach (var xi in data)
{
if (xi.HasValue)
{
double delta = xi.Value - mean;
double scaleDelta = delta / ++n;
double scaleDeltaSQR = scaleDelta * scaleDelta;
double tmpDelta = delta * (n - 1);
mean += scaleDelta;
kurtosis += tmpDelta * scaleDelta * scaleDeltaSQR * (n * n - 3 * n + 3)
+ 6 * scaleDeltaSQR * variance - 4 * scaleDelta * skewness;
skewness += tmpDelta * scaleDeltaSQR * (n - 2) - 3 * scaleDelta * variance;
variance += tmpDelta * scaleDelta;
if (minimum > xi) { minimum = xi.Value; }
if (maximum < xi) { maximum = xi.Value; }
}
}
SetStatistics(mean, variance, skewness, kurtosis, minimum, maximum, n);
}
///
/// Computes descriptive statistics from a stream of data values using high accuracy.
///
/// A sequence of datapoints.
private void ComputeHA(IEnumerable data)
{
decimal mean = 0;
decimal variance = 0;
decimal skewness = 0;
decimal kurtosis = 0;
decimal minimum = Decimal.MaxValue;
decimal maximum = Decimal.MinValue;
int n = 0;
foreach (decimal xi in data)
{
decimal delta = xi - mean;
decimal scaleDelta = delta / ++n;
decimal scaleDeltaSQR = scaleDelta * scaleDelta;
decimal tmpDelta = delta * (n - 1);
mean += scaleDelta;
kurtosis += tmpDelta * scaleDelta * scaleDeltaSQR * (n * n - 3 * n + 3)
+ 6 * scaleDeltaSQR * variance - 4 * scaleDelta * skewness;
skewness += tmpDelta * scaleDeltaSQR * (n - 2) - 3 * scaleDelta * variance;
variance += tmpDelta * scaleDelta;
if (minimum > xi) { minimum = xi; }
if (maximum < xi) { maximum = xi; }
}
SetStatistics((double)mean, (double)variance, (double)skewness, (double)kurtosis, (double)minimum, (double)maximum, n);
}
///
/// Computes descriptive statistics from a stream of nullable data values using high accuracy.
///
/// A sequence of datapoints.
private void ComputeHA(IEnumerable data)
{
decimal mean = 0;
decimal variance = 0;
decimal skewness = 0;
decimal kurtosis = 0;
decimal minimum = Decimal.MaxValue;
decimal maximum = Decimal.MinValue;
int n = 0;
foreach (decimal? xi in data)
{
if (xi.HasValue)
{
decimal delta = xi.Value - mean;
decimal scaleDelta = delta / ++n;
decimal scaleDeltaSQR = scaleDelta * scaleDelta;
decimal tmpDelta = delta * (n - 1);
mean += scaleDelta;
kurtosis += tmpDelta * scaleDelta * scaleDeltaSQR * (n * n - 3 * n + 3)
+ 6 * scaleDeltaSQR * variance - 4 * scaleDelta * skewness;
skewness += tmpDelta * scaleDeltaSQR * (n - 2) - 3 * scaleDelta * variance;
variance += tmpDelta * scaleDelta;
if (minimum > xi) { minimum = xi.Value; }
if (maximum < xi) { maximum = xi.Value; }
}
}
SetStatistics((double)mean, (double)variance, (double)skewness, (double)kurtosis, (double)minimum, (double)maximum, n);
}
///
/// Internal use. Method use for setting the statistics.
///
/// For setting Mean.
/// For setting Variance.
/// For setting Skewness.
/// For setting Kurtosis.
/// For setting Minimum.
/// For setting Maximum.
/// For setting Count.
private void SetStatistics(double mean, double variance, double skewness, double kurtosis, double minimum, double maximum, int n)
{
Mean = mean;
Count = n;
if (n > 0)
{
Minimum = minimum;
Maximum = maximum;
if (n > 1)
{
Variance = variance / (n - 1);
StandardDeviation = Math.Sqrt(Variance);
}
if (Variance != 0)
{
if (n > 2)
{
Skewness = (double)n / ((n - 1) * (n - 2)) * (skewness / (Variance * StandardDeviation));
}
if (n > 3)
{
Kurtosis = (((double)n * (n + 1))
/ ((n - 1) * (n - 2) * (n - 3))
* (kurtosis / (Variance * Variance)))
- ((3.0 * (n - 1) * (n - 1)) / ((n - 2) * (n - 3)));
}
}
}
}
}
}