//
// Math.NET Numerics, part of the Math.NET Project
// http://numerics.mathdotnet.com
// http://github.com/mathnet/mathnet-numerics
//
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// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
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// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
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// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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// OTHER DEALINGS IN THE SOFTWARE.
//
using System;
using System.Collections.Generic;
using MathNet.Numerics.Properties;
using MathNet.Numerics.Statistics;
namespace MathNet.Numerics
{
public static class GoodnessOfFit
{
///
/// Calculates the R-Squared value, also known as coefficient of determination,
/// given modelled and observed values
///
/// The values expected from the modelled
/// The actual data set values obtained
/// Squared Person product-momentum correlation coefficient.
public static double RSquared(IEnumerable modelledValues, IEnumerable observedValues)
{
var corr = Correlation.Pearson(modelledValues, observedValues);
return corr * corr;
}
///
/// Calculates the R value, also known as linear correlation coefficient,
/// given modelled and observed values
///
/// The values expected from the modelled
/// The actual data set values obtained
/// Person product-momentum correlation coefficient.
public static double R(IEnumerable modelledValues, IEnumerable observedValues)
{
return Correlation.Pearson(modelledValues, observedValues);
}
///
/// Calculates the Standard Error of the regression, given a sequence of
/// modeled/predicted values, and a sequence of actual/observed values
///
/// The modelled/predicted values
/// The observed/actual values
/// The Standard Error of the regression
public static double PopulationStandardError(IEnumerable modelledValues, IEnumerable observedValues)
{
return StandardError(modelledValues, observedValues, 0);
}
///
/// Calculates the Standard Error of the regression, given a sequence of
/// modeled/predicted values, and a sequence of actual/observed values
///
/// The modelled/predicted values
/// The observed/actual values
/// The degrees of freedom by which the
/// number of samples is reduced for performing the Standard Error calculation
/// The Standard Error of the regression
public static double StandardError(IEnumerable modelledValues, IEnumerable observedValues, int degreesOfFreedom)
{
using (IEnumerator ieM = modelledValues.GetEnumerator())
using (IEnumerator ieO = observedValues.GetEnumerator())
{
double n = 0;
double accumulator = 0;
while (ieM.MoveNext())
{
if (!ieO.MoveNext())
{
throw new ArgumentOutOfRangeException("modelledValues", Resources.ArgumentArraysSameLength);
}
double currentM = ieM.Current;
double currentO = ieO.Current;
var diff = currentM - currentO;
accumulator += diff * diff;
n++;
}
if (degreesOfFreedom >= n)
{
throw new ArgumentOutOfRangeException("degreesOfFreedom", Resources.DegreesOfFreedomMustBeLessThanSampleSize);
}
return Math.Sqrt(accumulator / (n - degreesOfFreedom));
}
}
}
}