// // Math.NET Numerics, part of the Math.NET Project // http://numerics.mathdotnet.com // http://github.com/mathnet/mathnet-numerics // http://mathnetnumerics.codeplex.com // Copyright (c) 2009-2010 Math.NET // Permission is hereby granted, free of charge, to any person // obtaining a copy of this software and associated documentation // files (the "Software"), to deal in the Software without // restriction, including without limitation the rights to use, // copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the // Software is furnished to do so, subject to the following // conditions: // The above copyright notice and this permission notice shall be // included in all copies or substantial portions of the Software. // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, // EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES // OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND // NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT // HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, // WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING // FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR // OTHER DEALINGS IN THE SOFTWARE. // namespace MathNet.Numerics.UnitTests.DistributionTests.Multivariate { using System; using System.Linq; using Distributions; using NUnit.Framework; /// /// NormalGamma distribution tests. /// [TestFixture, Category("Distributions")] public class NormalGammaTests { /// /// Can create NormalGamma. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanCreateNormalGamma(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(meanLocation, ng.MeanLocation); Assert.AreEqual(meanScale, ng.MeanScale); Assert.AreEqual(precShape, ng.PrecisionShape); Assert.AreEqual(precInvScale, ng.PrecisionInverseScale); } /// /// Can get density and density log. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 1.0, 2.0, 2.0)] public void CanGetDensityAndDensityLn(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(ng.DensityLn(meanLocation, precShape), Math.Log(ng.Density(meanLocation, precShape)), 1e-14); } /// /// NormalGamma constructor fails with invalid params. /// [Test] public void NormalGammaConstructorFailsWithInvalidParams() { Assert.That(() => new NormalGamma(1.0, -1.3, 2.0, 2.0), Throws.ArgumentException); Assert.That(() => new NormalGamma(1.0, 1.0, -1.0, 1.0), Throws.ArgumentException); Assert.That(() => new NormalGamma(1.0, 1.0, 1.0, -1.0), Throws.ArgumentException); } /// /// Can get mean location. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanGetMeanLocation(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(meanLocation, ng.MeanLocation); } /// /// Can set mean location. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanSetMeanLocation(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale) { MeanLocation = -5.0 }; Assert.AreEqual(-5.0, ng.MeanLocation); Assert.AreEqual(meanScale, ng.MeanScale); Assert.AreEqual(precShape, ng.PrecisionShape); Assert.AreEqual(precInvScale, ng.PrecisionInverseScale); } /// /// Can get mean scale. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanGetMeanScale(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(meanScale, ng.MeanScale); } /// /// Can set mean scale. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanSetMeanScale(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale) { MeanScale = 5.0 }; Assert.AreEqual(meanLocation, ng.MeanLocation); Assert.AreEqual(5.0, ng.MeanScale); Assert.AreEqual(precShape, ng.PrecisionShape); Assert.AreEqual(precInvScale, ng.PrecisionInverseScale); } /// /// Can get precision shape. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanGetPrecisionShape(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(precShape, ng.PrecisionShape); } /// /// Can set precision shape. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanSetPrecisionShape(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale) { PrecisionShape = 5.0 }; Assert.AreEqual(meanLocation, ng.MeanLocation); Assert.AreEqual(meanScale, ng.MeanScale); Assert.AreEqual(5.0, ng.PrecisionShape); Assert.AreEqual(precInvScale, ng.PrecisionInverseScale); } /// /// Can get precision inverse scale. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanGetPrecisionInverseScale(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(precInvScale, ng.PrecisionInverseScale); } /// /// Can set precision inverse scale. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] public void CanSetPrecisionPrecisionInverseScale(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale) { PrecisionInverseScale = 5.0 }; Assert.AreEqual(meanLocation, ng.MeanLocation); Assert.AreEqual(meanScale, ng.MeanScale); Assert.AreEqual(precShape, ng.PrecisionShape); Assert.AreEqual(5.0, ng.PrecisionInverseScale); } /// /// Can get mean marginals. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. /// Mean marginal mean. /// Mean marginal scale. /// Mean marginal degrees of freedom. [TestCase(0.0, 1.0, 1.0, 1.0, 0.0, 1.0, 2.0)] [TestCase(10.0, 1.0, 2.0, 2.0, 10.0, 1.0, 4.0)] [TestCase(10.0, 1.0, 2.0, Double.PositiveInfinity, 10.0, 0.5, Double.PositiveInfinity)] public void CanGetMeanMarginal(double meanLocation, double meanScale, double precShape, double precInvScale, double meanMarginalMean, double meanMarginalScale, double meanMarginalDoF) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); var mm = ng.MeanMarginal(); Assert.AreEqual(meanMarginalMean, mm.Location); Assert.AreEqual(meanMarginalScale, mm.Scale); Assert.AreEqual(meanMarginalDoF, mm.DegreesOfFreedom); } /// /// Can get precision marginal. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] [TestCase(10.0, 2.0, 2.0, Double.PositiveInfinity)] public void CanGetPrecisionMarginal(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); var pm = ng.PrecisionMarginal(); Assert.AreEqual(precShape, pm.Shape); Assert.AreEqual(precInvScale, pm.Rate); } /// /// Can get mean. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. /// Mean value. /// Mean precision. [TestCase(0.0, 1.0, 1.0, 1.0, 0.0, 1.0)] [TestCase(10.0, 1.0, 2.0, 2.0, 10.0, 1.0)] [TestCase(10.0, 1.0, 2.0, Double.PositiveInfinity, 10.0, 2.0)] public void CanGetMean(double meanLocation, double meanScale, double precShape, double precInvScale, double meanMean, double meanPrecision) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); Assert.AreEqual(meanMean, ng.Mean.Mean); Assert.AreEqual(meanPrecision, ng.Mean.Precision); } /// /// Has random source. /// [Test] public void HasRandomSource() { var ng = new NormalGamma(0.0, 1.0, 1.0, 1.0); Assert.IsNotNull(ng.RandomSource); } /// /// Can set random source. /// [Test] public void CanSetRandomSource() { GC.KeepAlive(new NormalGamma(0.0, 1.0, 1.0, 1.0) { RandomSource = new Random(0) }); } /// /// Validate variance. /// /// Mean location. /// Mean scale. /// Precision shape. /// Precision inverse scale. [TestCase(0.0, 1.0, 1.0, 1.0)] [TestCase(10.0, 2.0, 2.0, 2.0)] [TestCase(10.9, 2.0, 2.0, Double.PositiveInfinity)] public void ValidateVariance(double meanLocation, double meanScale, double precShape, double precInvScale) { var ng = new NormalGamma(meanLocation, meanScale, precShape, precInvScale); var x = precInvScale / (meanScale * (precShape - 1)); var t = precShape / Math.Sqrt(precInvScale); Assert.AreEqual(x, ng.Variance.Mean); Assert.AreEqual(t, ng.Variance.Precision); } /// /// Test the method which samples one variable at a time. /// [Test] public void SampleFollowsCorrectDistribution() { var cd = new NormalGamma(1.0, 4.0, 7.0, 3.5); // Sample from the distribution. var samples = new MeanPrecisionPair[CommonDistributionTests.NumberOfTestSamples]; for (var i = 0; i < CommonDistributionTests.NumberOfTestSamples; i++) { samples[i] = cd.Sample(); } // Extract the mean and precisions. var means = samples.Select(mp => mp.Mean).ToArray(); var precs = samples.Select(mp => mp.Precision).ToArray(); var meanMarginal = cd.MeanMarginal(); var precMarginal = cd.PrecisionMarginal(); // Check the precision distribution. CommonDistributionTests.ContinuousVapnikChervonenkisTest( CommonDistributionTests.ErrorTolerance, CommonDistributionTests.ErrorProbability, precs, precMarginal); // Check the mean distribution. CommonDistributionTests.ContinuousVapnikChervonenkisTest( CommonDistributionTests.ErrorTolerance, CommonDistributionTests.ErrorProbability, means, meanMarginal); } /// /// Test the method which samples a sequence of variables. /// [Test] public void SamplesFollowsCorrectDistribution() { var cd = new NormalGamma(1.0, 4.0, 3.0, 3.5); // Sample from the distribution. var samples = cd.Samples().Take(CommonDistributionTests.NumberOfTestSamples).ToArray(); // Extract the mean and precisions. var means = samples.Select(mp => mp.Mean).ToArray(); var precs = samples.Select(mp => mp.Precision).ToArray(); var meanMarginal = cd.MeanMarginal(); var precMarginal = cd.PrecisionMarginal(); // Check the precision distribution. CommonDistributionTests.ContinuousVapnikChervonenkisTest( CommonDistributionTests.ErrorTolerance, CommonDistributionTests.ErrorProbability, precs, precMarginal); // Check the mean distribution. CommonDistributionTests.ContinuousVapnikChervonenkisTest( CommonDistributionTests.ErrorTolerance, CommonDistributionTests.ErrorProbability, means, meanMarginal); } } }