// // Math.NET Numerics, part of the Math.NET Project // http://numerics.mathdotnet.com // http://github.com/mathnet/mathnet-numerics // http://mathnetnumerics.codeplex.com // Copyright (c) 2009-2010 Math.NET // Permission is hereby granted, free of charge, to any person // obtaining a copy of this software and associated documentation // files (the "Software"), to deal in the Software without // restriction, including without limitation the rights to use, // copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the // Software is furnished to do so, subject to the following // conditions: // The above copyright notice and this permission notice shall be // included in all copies or substantial portions of the Software. // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, // EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES // OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND // NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT // HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, // WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING // FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR // OTHER DEALINGS IN THE SOFTWARE. // using System; using System.Collections.Generic; using System.Linq; using MathNet.Numerics.Distributions; using MathNet.Numerics.Random; using MathNet.Numerics.Statistics; using NUnit.Framework; namespace MathNet.Numerics.UnitTests.DistributionTests { using Random = System.Random; /// /// This class will perform various tests on discrete and continuous univariate distributions. The multivariate distributions /// will implement these respective tests in their local unit test classes as they do not adhere to the same interfaces. /// [TestFixture] public class CommonDistributionTests { /// /// Gets or sets the number of samples we want. /// public static int NumberOfTestSamples { get; set; } /// /// Gets or sets the number of buckets in the histogram for the sampling function tests. /// public static int NumberOfBuckets { get; set; } /// /// Gets or sets the error we want to tolerate for sampling functions. /// public static double Error { get; set; } /// /// Gets or sets the error probability we want to tolerate for sampling functions. /// public static double ErrorProbability { get; set; } /// /// The list of discrete distributions which we test. /// private List _discreteDistributions; /// /// The list of continuous distributions which we test. /// private List _continuousDistributions; /// /// Initializes static members of the CommonDistributionTests class. /// static CommonDistributionTests() { NumberOfTestSamples = 3500000; NumberOfBuckets = 100; Error = 0.01; ErrorProbability = 0.001; } /// /// Set-up test parameters. /// [SetUp] public void SetupDistributions() { _discreteDistributions = new List { new Bernoulli(0.6), new Binomial(0.7, 10), new Categorical(new[] { 0.7, 0.3 }), new DiscreteUniform(1, 10) }; _continuousDistributions = new List { new Beta(1.0, 1.0), new ContinuousUniform(0.0, 1.0), new Gamma(1.0, 1.0), new Normal(0.0, 1.0), new Weibull(1.0, 1.0), new LogNormal(1.0, 1.0), new StudentT(0.0, 1.0, 5.0) }; } /// /// Validate that univariate distributions have random source. /// [Test] public void ValidateThatUnivariateDistributionsHaveRandomSource() { foreach (var dd in _discreteDistributions) { Assert.IsNotNull(dd.RandomSource); } foreach (var cd in _continuousDistributions) { Assert.IsNotNull(cd.RandomSource); } } /// /// Can set random source. /// [Test] public void CanSetRandomSource() { foreach (var dd in _discreteDistributions) { dd.RandomSource = new Random(); } foreach (var cd in _continuousDistributions) { cd.RandomSource = new Random(); } } [Test] public void HasRandomSourceEvenAfterSetToNull() { foreach (var dd in _discreteDistributions) { Assert.DoesNotThrow(() => dd.RandomSource = null); Assert.IsNotNull(dd.RandomSource); } foreach (var cd in _continuousDistributions) { Assert.DoesNotThrow(() => cd.RandomSource = null); Assert.IsNotNull(cd.RandomSource); } } /// /// Test the method which samples only one variable at a time. /// [Test] public void SampleFollowsCorrectDistribution() { Random rnd = new MersenneTwister(1); foreach (var dd in _discreteDistributions) { dd.RandomSource = rnd; var samples = new double[NumberOfTestSamples]; for (var i = 0; i < NumberOfTestSamples; i++) { samples[i] = dd.Sample(); } VapnikChervonenkisTest(Error, ErrorProbability, samples, dd); } foreach (var cd in _continuousDistributions) { cd.RandomSource = rnd; var samples = new double[NumberOfTestSamples]; for (var i = 0; i < NumberOfTestSamples; i++) { samples[i] = cd.Sample(); } VapnikChervonenkisTest(Error, ErrorProbability, samples, cd); } } /// /// Test the method which samples a sequence of variables. /// [Test] public void SamplesFollowsCorrectDistribution() { Random rnd = new MersenneTwister(1); foreach (var dd in _discreteDistributions) { dd.RandomSource = rnd; VapnikChervonenkisTest(Error, ErrorProbability, dd.Samples().Select(x => (double)x).Take(NumberOfTestSamples), dd); } foreach (var cd in _continuousDistributions) { cd.RandomSource = rnd; VapnikChervonenkisTest(Error, ErrorProbability, cd.Samples().Take(NumberOfTestSamples), cd); } } /// /// Vapnik Chervonenkis test. /// /// The error we are willing to tolerate. /// The error probability we are willing to tolerate. /// The samples to use for testing. /// The distribution we are testing. public static void VapnikChervonenkisTest(double epsilon, double delta, IEnumerable s, IUnivariateDistribution dist) { // Using VC-dimension, we can bound the probability of making an error when estimating empirical probability // distributions. We are using Theorem 2.41 in "All Of Nonparametric Statistics". // http://books.google.com/books?id=MRFlzQfRg7UC&lpg=PP1&dq=all%20of%20nonparametric%20statistics&pg=PA22#v=onepage&q=%22shatter%20coe%EF%AC%83cients%20do%20not%22&f=false . // For intervals on the real line the VC-dimension is 2. double n = s.Count(); Assert.Greater(n, Math.Ceiling(32.0 * Math.Log(16.0 / delta) / epsilon / epsilon)); var histogram = new Histogram(s, NumberOfBuckets); for (var i = 0; i < NumberOfBuckets; i++) { var p = dist.CumulativeDistribution(histogram[i].UpperBound) - dist.CumulativeDistribution(histogram[i].LowerBound); var pe = histogram[i].Count / n; Assert.Less(Math.Abs(p - pe), epsilon, dist.ToString()); } } } }