diff --git a/application/src/main/java/org/thingsboard/server/service/sync/vc/DefaultEntitiesVersionControlService.java b/application/src/main/java/org/thingsboard/server/service/sync/vc/DefaultEntitiesVersionControlService.java
index c69ff94630..dcc96b7d17 100644
--- a/application/src/main/java/org/thingsboard/server/service/sync/vc/DefaultEntitiesVersionControlService.java
+++ b/application/src/main/java/org/thingsboard/server/service/sync/vc/DefaultEntitiesVersionControlService.java
@@ -305,6 +305,7 @@ public class DefaultEntitiesVersionControlService implements EntitiesVersionCont
             throw new RuntimeException("Failed to load version control settings!", e);
         }
         try {
+            gitService.clearRepository(tenantId);
             gitService.initRepository(tenantId, savedVersionControlSettings);
         } catch (Exception e) {
             throw new RuntimeException("Failed to init repository!", e);