Browse Source

Added Multinomial distribution Added MersenneTwister Fixed namespace error in unit tests

Signed-off-by: jvangael <jurgen.vangael@gmail.com>

Signed-off-by: jvangael <jurgen.vangael@gmail.com>
la-knuth
Jurgen Van Gael 17 years ago
parent
commit
2d5561539b
  1. 2
      src/Numerics/Distributions/Discrete/Bernoulli.cs
  2. 6
      src/Numerics/Distributions/Multivariate/Dirichlet.cs
  3. 278
      src/Numerics/Distributions/Multivariate/Multinomial.cs
  4. 2
      src/Numerics/Numerics.csproj
  5. 312
      src/Numerics/Random/MersenneTwister.cs
  6. 117
      src/UnitTests/DistributionTests/Multivariate/MultinomialTests.cs
  7. 51
      src/UnitTests/Random/MersenneTwisterTests.cs
  8. 91
      src/UnitTests/Random/RandomTests.cs
  9. 2
      src/UnitTests/Random/SystemRandomExtensionTests.cs
  10. 3
      src/UnitTests/UnitTests.csproj

2
src/Numerics/Distributions/Discrete/Bernoulli.cs

@ -54,7 +54,7 @@ namespace MathNet.Numerics.Distributions
private Random _random;
/// <summary>
/// Construct a new Bernoulli distribution.
/// Initializes a new instance of the Bernoulli class.
/// </summary>
/// <param name="p">The probability of generating one.</param>
/// <exception cref="ArgumentOutOfRangeException">If the Bernoulli parameter is not in the range [0,1].</exception>

6
src/Numerics/Distributions/Multivariate/Dirichlet.cs

@ -122,11 +122,7 @@ namespace MathNet.Numerics.Distributions
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
_alpha = new double[alpha.Length];
for (int i = 0; i < alpha.Length; i++)
{
_alpha[i] = alpha[i];
}
_alpha = (double[]) alpha.Clone();
}
/// <summary>

278
src/Numerics/Distributions/Multivariate/Multinomial.cs

@ -0,0 +1,278 @@
// <copyright file="Bernoulli.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://mathnet.opensourcedotnet.info
//
// Copyright (c) 2009 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.Distributions
{
using System;
using System.Collections.Generic;
using Properties;
/// <summary>
/// Implements the multinomial distribution. For details about this distribution, see
/// <a href="http://en.wikipedia.org/wiki/Multinomial_distribution">Wikipedia - Multinomial distribution</a>.
/// </summary>
/// <remarks><para>The distribution is parameterized by a vector of ratios: in other words, the parameter
/// does not have to be normalized and sum to 1. The reason is that some vectors can't be exactly normalized
/// to sum to 1 in floating point representation.</para>
/// <para>The distribution will use the <see cref="System.Random"/> by default.
/// Users can set the random number generator by using the <see cref="RandomSource"/> property.</para>
/// <para>The statistics classes will check all the incoming parameters whether they are in the allowed
/// range. This might involve heavy computation. Optionally, by setting Control.CheckDistributionParameters
/// to false, all parameter checks can be turned off.</para></remarks>
public class Multinomial
{
/// <summary>
/// Stores the normalized multinomial probabilities.
/// </summary>
private double[] _p;
/// <summary>
/// The distribution's random number generator.
/// </summary>
private Random _random;
/// <summary>
/// Initializes a new instance of the Multinomial class.
/// </summary>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <exception cref="ArgumentException">If any of the probabilities are negative or do not sum to one.</exception>
public Multinomial(double[] p)
{
SetParameters(p);
RandomSource = new System.Random();
}
/* TODO
/// <summary>
/// Generate a multinomial distribution from histogram <paramref name="h"/>. The distribution will
/// not be automatically updated when the histogram changes.
/// </summary>
public Multinomial(Histogram h)
{
// The probability distribution vector.
_p = new double[h.BinCount];
// Fill in the distribution vector.
for (int i = 0; i < h.BinCount; i++)
{
_p[i] = h[i];
}
RandomNumberGenerator = new System.Random();
}*/
/// <summary>
/// A string representation of the distribution.
/// </summary>
public override string ToString()
{
return "Multinomial(Dimension = " + _p.Length + ")";
}
/// <summary>
/// Checks whether the parameters of the distribution are valid.
/// </summary>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <returns>If any of the probabilities are negative returns false, or if the sum of parameters is 0.0; otherwise true</returns>
private static bool IsValidParameterSet(double[] p)
{
double sum = 0.0;
for (int i = 0; i < p.Length; i++)
{
if (p[i] < 0.0 || Double.IsNaN(p[i]))
{
return false;
}
else
{
sum += p[i];
}
}
if (sum == 0.0)
{
return false;
}
return true;
}
/// <summary>
/// Sets the parameters of the distribution after checking their validity.
/// </summary>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <exception cref="ArgumentOutOfRangeException">When the parameters don't pass the <see cref="IsValidParameterSet"/> function.</exception>
private void SetParameters(double[] p)
{
if (Control.CheckDistributionParameters && !IsValidParameterSet(p))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
_p = (double[])p.Clone();
}
/// <summary>
/// Gets or sets the probability of generating a one.
/// </summary>
public double[] P
{
get
{
return (double[]) _p.Clone();
}
set
{
SetParameters(value);
}
}
/// <summary>
/// Gets or sets the random number generator which is used to draw random samples.
/// </summary>
public Random RandomSource
{
get
{
return _random;
}
set
{
if (value == null)
{
throw new ArgumentNullException();
}
_random = value;
}
}
/// <summary>
/// Samples one multinomial distributed random variable; also known as the Discrete distribution.
/// </summary>
/// <returns>One random integer between 0 and the size of the multinomial (exclusive).</returns>
public int Sample()
{
return Sample(RandomSource, _p);
}
/// <summary>
/// Samples a multinomially distributed random variable.
/// </summary>
/// <param name="n">The number of variables needed.</param>
/// <returns><paramref name="n"/> random integers between 0 and the size of the multinomial (exclusive).</returns>
public int[] Sample(int n)
{
return Sample(RandomSource, n, _p);
}
/// <summary>
/// Samples one multinomial distributed random variable; also known as the Discrete distribution.
/// </summary>
/// <param name="rnd">The random number generator to use.</param>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <returns>One random integer between 0 and the size of the multinomial (exclusive).</returns>
public static int Sample(System.Random rnd, double[] p)
{
if (Control.CheckDistributionParameters && !IsValidParameterSet(p))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
// The cumulative density of p.
double[] cp = UnnormalizedCDF(p);
double u = rnd.NextDouble()*cp[cp.Length - 1];
int idx = 0;
while (u > cp[idx])
{
idx++;
}
return idx;
}
/// <summary>
/// Samples a multinomially distributed random variable.
/// </summary>
/// <param name="rnd">The random number generator to use.</param>
/// <param name="n">The number of variables needed.</param>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <returns><paramref name="n"/> random integers between 0 and the size of the multinomial (exclusive).</returns>
public static int[] Sample(System.Random rnd, int n, double[] p)
{
if (Control.CheckDistributionParameters && !IsValidParameterSet(p))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
// The cumulative density of p.
double[] cp = UnnormalizedCDF(p);
int[] arr = new int[n];
for (int i = 0; i < n; i++)
{
double u = rnd.NextDouble()*cp[cp.Length - 1];
int idx = 0;
while (u > cp[idx])
{
idx++;
}
arr[i] = idx;
}
return arr;
}
/// <summary>
/// Computes the unnormalized cumulative distribution function. This method performs no
/// parameter checking.
/// </summary>
/// <param name="p">An array of nonnegative ratios: this array does not need to be normalized
/// as this is often impossible using floating point arithmetic.</param>
/// <returns>An array representing the unnormalized cumulative distribution function.</returns>
private static double[] UnnormalizedCDF(double[] p)
{
double[] cp = (double[]) p.Clone();
for (int i = 1; i < p.Length; i++)
{
cp[i] += cp[i - 1];
}
return cp;
}
}
}

2
src/Numerics/Numerics.csproj

@ -61,6 +61,7 @@
<Compile Include="Distributions\IDiscreteDistribution.cs" />
<Compile Include="Distributions\IDistribution.cs" />
<Compile Include="Distributions\Multivariate\Dirichlet.cs" />
<Compile Include="Distributions\Multivariate\Multinomial.cs" />
<Compile Include="IntegralTransforms\Algorithms\DiscreteHartleyTransform.Naive.cs" />
<Compile Include="IntegralTransforms\Algorithms\DiscreteHartleyTransform.Options.cs" />
<Compile Include="IntegralTransforms\HartleyOptions.cs" />
@ -102,6 +103,7 @@
<DependentUpon>Resources.resx</DependentUpon>
</Compile>
<Compile Include="Random\AbstractRandomNumberGenerator.cs" />
<Compile Include="Random\MersenneTwister.cs" />
<Compile Include="Random\SystemRandomExtensions.cs" />
<Compile Include="Sampling\Sample.Random.cs" />
<Compile Include="Sampling\Sample.Chebyshev.cs" />

312
src/Numerics/Random/MersenneTwister.cs

@ -0,0 +1,312 @@
// <copyright file="MersenneTwister.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://mathnet.opensourcedotnet.info
//
// Copyright (c) 2009 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
/*
Original code's copyright and license:
Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura,
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
3. The names of its contributors may not be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Any feedback is very welcome.
http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html
email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space)
*/
namespace MathNet.Numerics.Random
{
using System;
/// <summary>
/// Random number generator using Mersenne Twister 19937 algorithm.
/// </summary>
public class MersenneTwister : AbstractRandomNumberGenerator, IDisposable
{
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const uint _lower_mask = 0x7fffffff;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const int _m = 397;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const uint _matrix_a = 0x9908b0df;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const int _n = 624;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const double _reciprocal = 1.0/4294967295.0;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private const uint _upper_mask = 0x80000000;
/// <summary>
/// Mersenne twister constant.
/// </summary>
private static readonly uint[] _mag01 = {0x0U, _matrix_a};
/// <summary>
/// Mersenne twister constant.
/// </summary>
private readonly uint[] _mt = new uint[624];
/// <summary>
/// Mersenne twister constant.
/// </summary>
private int mti = _n + 1;
/// <summary>
/// Initializes a new instance of the <see cref="MersenneTwister"/> class using
/// the current time as the seed.
/// </summary>
/// <remarks>If the seed value is zero, it is set to one. Uses the
/// value of <see cref="Control.ThreadSafeRandomNumberGenerators"/> to
/// set whether the instance is thread safe.</remarks>
public MersenneTwister() : this((int) DateTime.Now.Ticks)
{
}
/// <summary>
/// Initializes a new instance of the <see cref="MersenneTwister"/> class using
/// the current time as the seed.
/// </summary>
/// <param name="threadSafe">if set to <c>true</c> , the class is thread safe.</param>
public MersenneTwister(bool threadSafe) : this((int) DateTime.Now.Ticks, threadSafe)
{
}
/// <summary>
/// Initializes a new instance of the <see cref="MersenneTwister"/> class.
/// </summary>
/// <param name="seed">The seed value.</param>
/// <remarks>Uses the value of <see cref="Control.ThreadSafeRandomNumberGenerators"/> to
/// set whether the instance is thread safe.</remarks>
public MersenneTwister(int seed) : this(seed, Control.ThreadSafeRandomNumberGenerators)
{
}
/// <summary>
/// Initializes a new instance of the <see cref="MersenneTwister"/> class.
/// </summary>
/// <param name="seed">The seed value.</param>
/// <param name="threadSafe">if set to <c>true</c>, the class is thread safe.</param>
public MersenneTwister(int seed, bool threadSafe) : base(threadSafe)
{
init_genrand((uint)seed);
}
/*/// <summary>
/// Initializes a new instance of the <see cref="MersenneTwister"/> class.
/// </summary>
/// <param name="init_key">The initialization key.</param>
public MersenneTwister(int[] init_key)
{
if (init_key == null)
{
throw new ArgumentNullException("init_key");
}
uint[] array = new uint[init_key.Length];
for (int i = 0; i < array.Length; i++)
{
array[i] = (uint) init_key[i];
}
init_by_array(array);
}
*/
/* initializes _mt[_n] with a seed */
private void init_genrand(uint s)
{
_mt[0] = s & 0xffffffff;
for (mti = 1; mti < _n; mti++)
{
_mt[mti] = (1812433253*(_mt[mti - 1] ^ (_mt[mti - 1] >> 30)) + (uint) mti);
/* See Knuth TAOCP Vol2. 3rd Ed. P.106 for multiplier. */
/* In the previous versions, MSBs of the seed affect */
/* only MSBs of the array _mt[]. */
/* 2002/01/09 modified by Makoto Matsumoto */
_mt[mti] &= 0xffffffff;
/* for >32 bit machines */
}
}
/* initialize by an array with array-length */
/* init_key is the array for initializing keys */
/* slight change for C++, 2004/2/26 */
/* private void init_by_array(uint[] init_key)
{
uint key_length = (uint) init_key.Length;
init_genrand(19650218);
uint i = 1;
uint j = 0;
uint k = (_n > key_length ? _n : key_length);
for (; k > 0; k--)
{
_mt[i] = (_mt[i] ^ ((_mt[i - 1] ^ (_mt[i - 1] >> 30))*1664525)) + init_key[j] + j; //non linear
_mt[i] &= 0xffffffff; // for WORDSIZE > 32 machines
i++;
j++;
if (i >= _n)
{
_mt[0] = _mt[_n - 1];
i = 1;
}
if (j >= key_length) j = 0;
}
for (k = _n - 1; k > 0; k--)
{
_mt[i] = (_mt[i] ^ ((_mt[i - 1] ^ (_mt[i - 1] >> 30))*1566083941)) - i; // non linear
_mt[i] &= 0xffffffff; // for WORDSIZE > 32 machines
i++;
if (i >= _n)
{
_mt[0] = _mt[_n - 1];
i = 1;
}
}
_mt[0] = 0x80000000; // MSB is 1; assuring non-zero initial array
}*/
/* generates a random number on [0,0xffffffff]-interval */
private uint genrand_int32()
{
uint y;
/* mag01[x] = x * MATRIX_A for x=0,1 */
if (mti >= _n)
{
/* generate _n words at one time */
int kk;
if (mti == _n + 1) /* if init_genrand() has not been called, */
init_genrand(5489); /* a default initial seed is used */
for (kk = 0; kk < _n - _m; kk++)
{
y = (_mt[kk] & _upper_mask) | (_mt[kk + 1] & _lower_mask);
_mt[kk] = _mt[kk + _m] ^ (y >> 1) ^ _mag01[y & 0x1];
}
for (; kk < _n - 1; kk++)
{
y = (_mt[kk] & _upper_mask) | (_mt[kk + 1] & _lower_mask);
_mt[kk] = _mt[kk + (_m - _n)] ^ (y >> 1) ^ _mag01[y & 0x1];
}
y = (_mt[_n - 1] & _upper_mask) | (_mt[0] & _lower_mask);
_mt[_n - 1] = _mt[_m - 1] ^ (y >> 1) ^ _mag01[y & 0x1];
mti = 0;
}
y = _mt[mti++];
/* Tempering */
y ^= (y >> 11);
y ^= (y << 7) & 0x9d2c5680;
y ^= (y << 15) & 0xefc60000;
y ^= (y >> 18);
return y;
}
/// <summary>
/// Returns a random number between 0.0 and 1.0.
/// </summary>
/// <returns>
/// A double-precision floating point number greater than or equal to 0.0, and less than 1.0.
/// </returns>
protected override double DoSample()
{
return genrand_int32() * _reciprocal;
}
/* /// <summary>
/// Generates a random number on [0,1) with 53-bit resolution.
/// </summary>
/// <returns>A random number on [0,1) with 53-bit resolution.</returns>
public double NextDoubleResolution53()
{
ulong a = genrand_int32() >> 5, b = genrand_int32() >> 6;
return (a * 67108864.0 + b) * (1.0 / 9007199254740992.0);
}*/
#region IDisposable Members
/// <summary>
/// Performs application-defined tasks associated with freeing, releasing, or resetting unmanaged resources.
/// </summary>
public void Dispose()
{
//do nothing in the managed version.
}
#endregion
}
}

117
src/UnitTests/DistributionTests/Multivariate/MultinomialTests.cs

@ -0,0 +1,117 @@
// <copyright file="MultinomialTests.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://mathnet.opensourcedotnet.info
//
// Copyright (c) 2009 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.UnitTests.DistributionTests
{
using System;
using System.Linq;
using MbUnit.Framework;
using MathNet.Numerics.Distributions;
[TestFixture]
public class MultinomialTests
{
double[] badP;
double[] badP2;
double[] smallP;
double[] largeP;
[SetUp]
public void SetUp()
{
Control.CheckDistributionParameters = true;
badP = new double[] { -1.0, 1.0 };
badP2 = new double[] { 0.0, 0.0 };
smallP = new double[] {1.0, 1.0, 1.0};
largeP = new double[] {1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0};
}
[Test]
public void CanCreateMultinomial()
{
var m = new Multinomial(largeP);
AssertEx.AreEqual<double[]>(largeP, m.P);
}
[Test]
[ExpectedException(typeof(ArgumentOutOfRangeException))]
public void MultinomialCreateFailsWithNegativeRatios()
{
var m = new Multinomial(badP);
}
[Test]
[ExpectedException(typeof(ArgumentOutOfRangeException))]
public void MultinomialCreateFailsWithAllZeroRatios()
{
var m = new Multinomial(badP2);
}
[Test]
public void ValidateToString()
{
var b = new Multinomial(smallP);
AssertEx.AreEqual<string>("Multinomial(Dimension = 3)", b.ToString());
}
[Test]
public void CanSetProbability()
{
var b = new Multinomial(largeP);
b.P = smallP;
}
[Test]
[ExpectedException(typeof(ArgumentOutOfRangeException))]
public void SetProbabilityFails()
{
var b = new Multinomial(largeP);
b.P = badP;
}
[Test]
public void CanSampleStatic()
{
var d = Multinomial.Sample(new Random(), largeP);
}
[Test]
[ExpectedException(typeof(ArgumentOutOfRangeException))]
public void FailSampleStatic()
{
var d = Multinomial.Sample(new Random(), badP);
}
[Test]
public void CanSample()
{
var n = new Multinomial(largeP);
var d = n.Sample();
}
}
}

51
src/UnitTests/Random/MersenneTwisterTests.cs

@ -0,0 +1,51 @@
// <copyright file="SystemRandomExtensionTests.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://mathnet.opensourcedotnet.info
//
// Copyright (c) 2009 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.UnitTests.RandomTests
{
using MbUnit.Framework;
using MathNet.Numerics.Random;
[TestFixture]
public class MersenneTwisterTests : RandomTests
{
public MersenneTwisterTests() : base(typeof(MersenneTwister))
{
}
[Test, MultipleAsserts]
public void SampleKnownValues()
{
MersenneTwister mt = new MersenneTwister(0);
Assert.AreEqual(mt.NextDouble(), 0.5488135024320365);
Assert.AreEqual(mt.NextDouble(), 0.5928446165269344);
Assert.AreEqual(mt.NextDouble(), 0.7151893651381110);
Assert.AreEqual(mt.NextDouble(), 0.8442657442866512);
}
}
}

91
src/UnitTests/Random/RandomTests.cs

@ -0,0 +1,91 @@
// <copyright file="SystemRandomExtensionTests.cs" company="Math.NET">
// Math.NET Numerics, part of the Math.NET Project
// http://mathnet.opensourcedotnet.info
//
// Copyright (c) 2009 Math.NET
//
// Permission is hereby granted, free of charge, to any person
// obtaining a copy of this software and associated documentation
// files (the "Software"), to deal in the Software without
// restriction, including without limitation the rights to use,
// copy, modify, merge, publish, distribute, sublicense, and/or sell
// copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following
// conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
// OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
// HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
// WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.UnitTests.RandomTests
{
using System;
using System.Threading;
using MbUnit.Framework;
using MathNet.Numerics.Random;
public abstract class RandomTests
{
private const int _n = 10000;
private readonly Type _randomType;
protected RandomTests(Type randomType)
{
_randomType = randomType;
}
[Test]
public void Sample()
{
System.Random random = (System.Random) Activator.CreateInstance(_randomType, new object[] {false});
double sum = 0;
for (int i = 0; i < _n; i++)
{
double next = random.NextDouble();
sum += next;
Assert.IsTrue(next >= 0);
Assert.IsTrue(next <= 1);
}
//make sure are within 10% of the expected sum.
Assert.IsTrue(sum >= _n / 2.0 - .05 * _n);
Assert.IsTrue(sum <= _n / 2.0 + .05 * _n);
if (random is IDisposable)
{
((IDisposable) random).Dispose();
}
}
[Test]
public void ThreadSafeSample()
{
System.Random random = (System.Random) Activator.CreateInstance(_randomType, new object[] {true});
Thread t1 = new Thread(runTest);
Thread t2 = new Thread(runTest);
t1.Start(random);
t2.Start(random);
t1.Join();
t2.Join();
}
public void runTest(object random)
{
System.Random rng = (System.Random) random;
for (int i = 0; i < _n; i++)
{
double next = rng.NextDouble();
Assert.IsTrue(next >= 0);
Assert.IsTrue(next <= 1);
}
}
}
}

2
src/UnitTests/Random/SystemRandomExtensionTests.cs

@ -26,7 +26,7 @@
// OTHER DEALINGS IN THE SOFTWARE.
// </copyright>
namespace MathNet.Numerics.UnitTests.DistributionTests
namespace MathNet.Numerics.UnitTests.RandomTests
{
using MbUnit.Framework;
using MathNet.Numerics.Random;

3
src/UnitTests/UnitTests.csproj

@ -72,6 +72,7 @@
<Compile Include="DistributionTests\Continuous\NormalTests.cs" />
<Compile Include="DistributionTests\Discrete\BernoulliTests.cs" />
<Compile Include="DistributionTests\Multivariate\DirichletTests.cs" />
<Compile Include="DistributionTests\Multivariate\MultinomialTests.cs" />
<Compile Include="IntegralTransformsTests\HartleyTest.cs" />
<Compile Include="IntegralTransformsTests\FourierTest.cs" />
<Compile Include="IntegralTransformsTests\MatchingNaiveTransformTest.cs" />
@ -93,6 +94,8 @@
<Compile Include="NumberTheoryTests\IntegerTheoryTest.cs" />
<Compile Include="PrecisionTest.cs" />
<Compile Include="Properties\AssemblyInfo.cs" />
<Compile Include="Random\MersenneTwisterTests.cs" />
<Compile Include="Random\RandomTests.cs" />
<Compile Include="Random\SystemRandomExtensionTests.cs" />
<Compile Include="SortingTests.cs" />
<Compile Include="SpecialFunctionsTests\ErfTests.cs" />

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