// // Math.NET Numerics, part of the Math.NET Project // http://numerics.mathdotnet.com // http://github.com/mathnet/mathnet-numerics // http://mathnetnumerics.codeplex.com // // Copyright (c) 2009-2013 Math.NET // // Permission is hereby granted, free of charge, to any person // obtaining a copy of this software and associated documentation // files (the "Software"), to deal in the Software without // restriction, including without limitation the rights to use, // copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the // Software is furnished to do so, subject to the following // conditions: // // The above copyright notice and this permission notice shall be // included in all copies or substantial portions of the Software. // // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, // EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES // OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND // NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT // HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, // WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING // FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR // OTHER DEALINGS IN THE SOFTWARE. // using System; using System.Collections.Generic; using MathNet.Numerics.Properties; using MathNet.Numerics.Random; namespace MathNet.Numerics.Distributions { /// /// Continuous Univariate Chi-Squared distribution. /// This distribution is a sum of the squares of k independent standard normal random variables. /// Wikipedia - ChiSquare distribution. /// public class ChiSquared : IContinuousDistribution { System.Random _random; double _freedom; /// /// Initializes a new instance of the class. /// /// The degrees of freedom (k) of the distribution. Range: k > 0. public ChiSquared(double freedom) { _random = SystemRandomSource.Default; SetParameters(freedom); } /// /// Initializes a new instance of the class. /// /// The degrees of freedom (k) of the distribution. Range: k > 0. /// The random number generator which is used to draw random samples. public ChiSquared(double freedom, System.Random randomSource) { _random = randomSource ?? SystemRandomSource.Default; SetParameters(freedom); } /// /// A string representation of the distribution. /// /// a string representation of the distribution. public override string ToString() { return "ChiSquared(k = " + _freedom + ")"; } /// /// Sets the parameters of the distribution after checking their validity. /// /// The degrees of freedom (k) of the distribution. Range: k > 0. /// When the parameters are out of range. void SetParameters(double freedom) { if (freedom <= 0.0 || Double.IsNaN(freedom)) { throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters); } _freedom = freedom; } /// /// Gets or sets the degrees of freedom (k) of the Chi-Squared distribution. Range: k > 0. /// public double DegreesOfFreedom { get { return _freedom; } set { SetParameters(value); } } /// /// Gets or sets the random number generator which is used to draw random samples. /// public System.Random RandomSource { get { return _random; } set { _random = value ?? SystemRandomSource.Default; } } /// /// Gets the mean of the distribution. /// public double Mean { get { return _freedom; } } /// /// Gets the variance of the distribution. /// public double Variance { get { return 2.0*_freedom; } } /// /// Gets the standard deviation of the distribution. /// public double StdDev { get { return Math.Sqrt(2.0 * _freedom); } } /// /// Gets the entropy of the distribution. /// public double Entropy { get { return (_freedom/2.0) + Math.Log(2.0*SpecialFunctions.Gamma(_freedom/2.0)) + ((1.0 - (_freedom/2.0))*SpecialFunctions.DiGamma(_freedom/2.0)); } } /// /// Gets the skewness of the distribution. /// public double Skewness { get { return Math.Sqrt(8.0 / _freedom); } } /// /// Gets the mode of the distribution. /// public double Mode { get { return _freedom - 2.0; } } /// /// Gets the median of the distribution. /// public double Median { get { return _freedom - (2.0 / 3.0); } } /// /// Gets the minimum of the distribution. /// public double Minimum { get { return 0.0; } } /// /// Gets the maximum of the distribution. /// public double Maximum { get { return double.PositiveInfinity; } } /// /// Computes the probability density of the distribution (PDF) at x, i.e. ∂P(X ≤ x)/∂x. /// /// The location at which to compute the density. /// the density at . /// public double Density(double x) { return (Math.Pow(x, (_freedom/2.0) - 1.0)*Math.Exp(-x/2.0))/(Math.Pow(2.0, _freedom/2.0)*SpecialFunctions.Gamma(_freedom/2.0)); } /// /// Computes the log probability density of the distribution (lnPDF) at x, i.e. ln(∂P(X ≤ x)/∂x). /// /// The location at which to compute the log density. /// the log density at . /// public double DensityLn(double x) { return (-x/2.0) + (((_freedom/2.0) - 1.0)*Math.Log(x)) - ((_freedom/2.0)*Math.Log(2)) - SpecialFunctions.GammaLn(_freedom/2.0); } /// /// Computes the cumulative distribution (CDF) of the distribution at x, i.e. P(X ≤ x). /// /// The location at which to compute the cumulative distribution function. /// the cumulative distribution at location . /// public double CumulativeDistribution(double x) { return SpecialFunctions.GammaLowerIncomplete(_freedom/2.0, x/2.0)/SpecialFunctions.Gamma(_freedom/2.0); } /// /// Generates a sample from the ChiSquare distribution. /// /// a sample from the distribution. public double Sample() { return SampleUnchecked(_random, _freedom); } /// /// Generates a sequence of samples from the ChiSquare distribution. /// /// a sequence of samples from the distribution. public IEnumerable Samples() { while (true) { yield return SampleUnchecked(_random, _freedom); } } /// /// Samples the distribution. /// /// The random number generator to use. /// The degrees of freedom (k) of the distribution. Range: k > 0. /// a random number from the distribution. static double SampleUnchecked(System.Random rnd, double freedom) { // Use the simple method if the degrees if freedom is an integer anyway if (Math.Floor(freedom) == freedom && freedom < Int32.MaxValue) { double sum = 0; var n = (int)freedom; for (var i = 0; i < n; i++) { sum += Math.Pow(Normal.Sample(rnd, 0.0, 1.0), 2); } return sum; } //Call the gamma function (see http://en.wikipedia.org/wiki/Gamma_distribution#Specializations //for a justification) return Gamma.SampleUnchecked(rnd, freedom / 2.0, .5); } /// /// Computes the probability density of the distribution (PDF) at x, i.e. ∂P(X ≤ x)/∂x. /// /// The degrees of freedom (k) of the distribution. Range: k > 0. /// The location at which to compute the density. /// the density at . /// public static double PDF(double freedom, double x) { if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters); return (Math.Pow(x, (freedom/2.0) - 1.0)*Math.Exp(-x/2.0))/(Math.Pow(2.0, freedom/2.0)*SpecialFunctions.Gamma(freedom/2.0)); } /// /// Computes the log probability density of the distribution (lnPDF) at x, i.e. ln(∂P(X ≤ x)/∂x). /// /// The degrees of freedom (k) of the distribution. Range: k > 0. /// The location at which to compute the density. /// the log density at . /// public static double PDFLn(double freedom, double x) { if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters); return (-x/2.0) + (((freedom/2.0) - 1.0)*Math.Log(x)) - ((freedom/2.0)*Math.Log(2)) - SpecialFunctions.GammaLn(freedom/2.0); } /// /// Computes the cumulative distribution (CDF) of the distribution at x, i.e. P(X ≤ x). /// /// The location at which to compute the cumulative distribution function. /// The degrees of freedom (k) of the distribution. Range: k > 0. /// the cumulative distribution at location . /// public static double CDF(double freedom, double x) { if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters); return SpecialFunctions.GammaLowerIncomplete(freedom/2.0, x/2.0)/SpecialFunctions.Gamma(freedom/2.0); } /// /// Generates a sample from the ChiSquare distribution. /// /// The random number generator to use. /// The degrees of freedom (k) of the distribution. Range: k > 0. /// a sample from the distribution. public static double Sample(System.Random rnd, double freedom) { if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters); return SampleUnchecked(rnd, freedom); } /// /// Generates a sequence of samples from the distribution. /// /// The random number generator to use. /// The degrees of freedom (k) of the distribution. Range: k > 0. /// a sample from the distribution. public static IEnumerable Samples(System.Random rnd, double freedom) { if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters); while (true) { yield return SampleUnchecked(rnd, freedom); } } } }