//
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// http://numerics.mathdotnet.com
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using System;
using System.Collections.Generic;
using MathNet.Numerics.Properties;
using MathNet.Numerics.Random;
namespace MathNet.Numerics.Distributions
{
///
/// Continuous Univariate Chi-Squared distribution.
/// This distribution is a sum of the squares of k independent standard normal random variables.
/// Wikipedia - ChiSquare distribution.
///
public class ChiSquared : IContinuousDistribution
{
System.Random _random;
double _freedom;
///
/// Initializes a new instance of the class.
///
/// The degrees of freedom (k) of the distribution. Range: k > 0.
public ChiSquared(double freedom)
{
_random = SystemRandomSource.Default;
SetParameters(freedom);
}
///
/// Initializes a new instance of the class.
///
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// The random number generator which is used to draw random samples.
public ChiSquared(double freedom, System.Random randomSource)
{
_random = randomSource ?? SystemRandomSource.Default;
SetParameters(freedom);
}
///
/// A string representation of the distribution.
///
/// a string representation of the distribution.
public override string ToString()
{
return "ChiSquared(k = " + _freedom + ")";
}
///
/// Sets the parameters of the distribution after checking their validity.
///
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// When the parameters are out of range.
void SetParameters(double freedom)
{
if (freedom <= 0.0 || Double.IsNaN(freedom))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
_freedom = freedom;
}
///
/// Gets or sets the degrees of freedom (k) of the Chi-Squared distribution. Range: k > 0.
///
public double DegreesOfFreedom
{
get { return _freedom; }
set { SetParameters(value); }
}
///
/// Gets or sets the random number generator which is used to draw random samples.
///
public System.Random RandomSource
{
get { return _random; }
set { _random = value ?? SystemRandomSource.Default; }
}
///
/// Gets the mean of the distribution.
///
public double Mean
{
get { return _freedom; }
}
///
/// Gets the variance of the distribution.
///
public double Variance
{
get { return 2.0*_freedom; }
}
///
/// Gets the standard deviation of the distribution.
///
public double StdDev
{
get { return Math.Sqrt(2.0 * _freedom); }
}
///
/// Gets the entropy of the distribution.
///
public double Entropy
{
get { return (_freedom/2.0) + Math.Log(2.0*SpecialFunctions.Gamma(_freedom/2.0)) + ((1.0 - (_freedom/2.0))*SpecialFunctions.DiGamma(_freedom/2.0)); }
}
///
/// Gets the skewness of the distribution.
///
public double Skewness
{
get { return Math.Sqrt(8.0 / _freedom); }
}
///
/// Gets the mode of the distribution.
///
public double Mode
{
get { return _freedom - 2.0; }
}
///
/// Gets the median of the distribution.
///
public double Median
{
get { return _freedom - (2.0 / 3.0); }
}
///
/// Gets the minimum of the distribution.
///
public double Minimum
{
get { return 0.0; }
}
///
/// Gets the maximum of the distribution.
///
public double Maximum
{
get { return double.PositiveInfinity; }
}
///
/// Computes the probability density of the distribution (PDF) at x, i.e. ∂P(X ≤ x)/∂x.
///
/// The location at which to compute the density.
/// the density at .
///
public double Density(double x)
{
return (Math.Pow(x, (_freedom/2.0) - 1.0)*Math.Exp(-x/2.0))/(Math.Pow(2.0, _freedom/2.0)*SpecialFunctions.Gamma(_freedom/2.0));
}
///
/// Computes the log probability density of the distribution (lnPDF) at x, i.e. ln(∂P(X ≤ x)/∂x).
///
/// The location at which to compute the log density.
/// the log density at .
///
public double DensityLn(double x)
{
return (-x/2.0) + (((_freedom/2.0) - 1.0)*Math.Log(x)) - ((_freedom/2.0)*Math.Log(2)) - SpecialFunctions.GammaLn(_freedom/2.0);
}
///
/// Computes the cumulative distribution (CDF) of the distribution at x, i.e. P(X ≤ x).
///
/// The location at which to compute the cumulative distribution function.
/// the cumulative distribution at location .
///
public double CumulativeDistribution(double x)
{
return SpecialFunctions.GammaLowerIncomplete(_freedom/2.0, x/2.0)/SpecialFunctions.Gamma(_freedom/2.0);
}
///
/// Generates a sample from the ChiSquare distribution.
///
/// a sample from the distribution.
public double Sample()
{
return SampleUnchecked(_random, _freedom);
}
///
/// Generates a sequence of samples from the ChiSquare distribution.
///
/// a sequence of samples from the distribution.
public IEnumerable Samples()
{
while (true)
{
yield return SampleUnchecked(_random, _freedom);
}
}
///
/// Samples the distribution.
///
/// The random number generator to use.
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// a random number from the distribution.
static double SampleUnchecked(System.Random rnd, double freedom)
{
// Use the simple method if the degrees if freedom is an integer anyway
if (Math.Floor(freedom) == freedom && freedom < Int32.MaxValue)
{
double sum = 0;
var n = (int)freedom;
for (var i = 0; i < n; i++)
{
sum += Math.Pow(Normal.Sample(rnd, 0.0, 1.0), 2);
}
return sum;
}
//Call the gamma function (see http://en.wikipedia.org/wiki/Gamma_distribution#Specializations
//for a justification)
return Gamma.SampleUnchecked(rnd, freedom / 2.0, .5);
}
///
/// Computes the probability density of the distribution (PDF) at x, i.e. ∂P(X ≤ x)/∂x.
///
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// The location at which to compute the density.
/// the density at .
///
public static double PDF(double freedom, double x)
{
if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters);
return (Math.Pow(x, (freedom/2.0) - 1.0)*Math.Exp(-x/2.0))/(Math.Pow(2.0, freedom/2.0)*SpecialFunctions.Gamma(freedom/2.0));
}
///
/// Computes the log probability density of the distribution (lnPDF) at x, i.e. ln(∂P(X ≤ x)/∂x).
///
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// The location at which to compute the density.
/// the log density at .
///
public static double PDFLn(double freedom, double x)
{
if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters);
return (-x/2.0) + (((freedom/2.0) - 1.0)*Math.Log(x)) - ((freedom/2.0)*Math.Log(2)) - SpecialFunctions.GammaLn(freedom/2.0);
}
///
/// Computes the cumulative distribution (CDF) of the distribution at x, i.e. P(X ≤ x).
///
/// The location at which to compute the cumulative distribution function.
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// the cumulative distribution at location .
///
public static double CDF(double freedom, double x)
{
if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters);
return SpecialFunctions.GammaLowerIncomplete(freedom/2.0, x/2.0)/SpecialFunctions.Gamma(freedom/2.0);
}
///
/// Generates a sample from the ChiSquare distribution.
///
/// The random number generator to use.
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// a sample from the distribution.
public static double Sample(System.Random rnd, double freedom)
{
if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters);
return SampleUnchecked(rnd, freedom);
}
///
/// Generates a sequence of samples from the distribution.
///
/// The random number generator to use.
/// The degrees of freedom (k) of the distribution. Range: k > 0.
/// a sample from the distribution.
public static IEnumerable Samples(System.Random rnd, double freedom)
{
if (freedom <= 0.0) throw new ArgumentOutOfRangeException("freedom", Resources.InvalidDistributionParameters);
while (true)
{
yield return SampleUnchecked(rnd, freedom);
}
}
}
}