//
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// http://numerics.mathdotnet.com
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using System;
using MathNet.Numerics.LinearAlgebra;
using MathNet.Numerics.LinearAlgebra.Double;
using MathNet.Numerics.LinearAlgebra.Factorization;
using MathNet.Numerics.Properties;
namespace MathNet.Numerics.Distributions
{
///
/// Multivariate Matrix-valued Normal distributions. The distribution
/// is parameterized by a mean matrix (M), a covariance matrix for the rows (V) and a covariance matrix
/// for the columns (K). If the dimension of M is d-by-m then V is d-by-d and K is m-by-m.
/// Wikipedia - MatrixNormal distribution.
///
/// The distribution will use the by default.
/// Users can set the random number generator by using the property.
/// The statistics classes will check all the incoming parameters whether they are in the allowed
/// range. This might involve heavy computation. Optionally, by setting Control.CheckDistributionParameters
/// to false, all parameter checks can be turned off.
public class MatrixNormal
{
///
/// The mean of the matrix normal distribution.
///
Matrix _m;
///
/// The covariance matrix for the rows.
///
Matrix _v;
///
/// The covariance matrix for the columns.
///
Matrix _k;
///
/// The distribution's random number generator.
///
System.Random _random;
///
/// Initializes a new instance of the class.
///
/// The mean of the matrix normal.
/// The covariance matrix for the rows.
/// The covariance matrix for the columns.
/// If the dimensions of the mean and two covariance matrices don't match.
public MatrixNormal(Matrix m, Matrix v, Matrix k)
{
_random = new System.Random();
SetParameters(m, v, k);
}
///
/// Initializes a new instance of the class.
///
/// The mean of the matrix normal.
/// The covariance matrix for the rows.
/// The covariance matrix for the columns.
/// The random number generator which is used to draw random samples.
/// If the dimensions of the mean and two covariance matrices don't match.
public MatrixNormal(Matrix m, Matrix v, Matrix k, System.Random randomSource)
{
_random = randomSource ?? new System.Random();
SetParameters(m, v, k);
}
///
/// Returns a that represents this instance.
///
///
/// A that represents this instance.
///
public override string ToString()
{
return "MatrixNormal(Rows = " + _m.RowCount + ", Columns = " + _m.ColumnCount + ")";
}
///
/// Gets or sets the mean. (M)
///
/// The mean of the distribution.
public Matrix Mean
{
get { return _m; }
set { SetParameters(value, _v, _k); }
}
///
/// Gets or sets the row covariance. (V)
///
/// The row covariance.
public Matrix RowCovariance
{
get { return _v; }
set { SetParameters(_m, value, _k); }
}
///
/// Gets or sets the column covariance. (K)
///
/// The column covariance.
public Matrix ColumnCovariance
{
get { return _k; }
set { SetParameters(_m, _v, value); }
}
///
/// Sets the parameters of the distribution after checking their validity.
///
/// The mean of the matrix normal.
/// The covariance matrix for the rows.
/// The covariance matrix for the columns.
/// When the parameters don't pass the function.
void SetParameters(Matrix m, Matrix v, Matrix k)
{
if (Control.CheckDistributionParameters && !IsValidParameterSet(m, v, k))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
_m = m;
_v = v;
_k = k;
}
///
/// Checks whether the parameters of the distribution are valid.
///
/// The mean of the matrix normal.
/// The covariance matrix for the rows.
/// The covariance matrix for the columns.
/// true when the parameters are valid, false otherwise.
static bool IsValidParameterSet(Matrix m, Matrix v, Matrix k)
{
var n = m.RowCount;
var p = m.ColumnCount;
if (v.ColumnCount != n || v.RowCount != n)
{
return false;
}
if (k.ColumnCount != p || k.RowCount != p)
{
return false;
}
for (var i = 0; i < v.RowCount; i++)
{
if (v.At(i, i) <= 0)
{
return false;
}
}
for (var i = 0; i < k.RowCount; i++)
{
if (k.At(i, i) <= 0)
{
return false;
}
}
return true;
}
///
/// Gets or sets the random number generator which is used to draw random samples.
///
public System.Random RandomSource
{
get { return _random; }
set
{
if (value == null)
{
throw new ArgumentNullException();
}
_random = value;
}
}
///
/// Evaluates the probability density function for the matrix normal distribution.
///
/// The matrix at which to evaluate the density at.
/// the density at
/// If the argument does not have the correct dimensions.
public double Density(Matrix x)
{
if (x.RowCount != _m.RowCount || x.ColumnCount != _m.ColumnCount)
{
throw Matrix.DimensionsDontMatch(x, _m, "x");
}
var a = x - _m;
var cholV = Cholesky.Create(_v);
var cholK = Cholesky.Create(_k);
return Math.Exp(-0.5*cholV.Solve(a.Transpose()*cholK.Solve(a)).Trace())
/Math.Pow(2.0*Constants.Pi, x.RowCount*x.ColumnCount/2.0)
/Math.Pow(cholV.Determinant, x.RowCount/2.0)
/Math.Pow(cholK.Determinant, x.ColumnCount/2.0);
}
///
/// Samples a matrix normal distributed random variable.
///
/// A random number from this distribution.
public Matrix Sample()
{
return Sample(RandomSource, _m, _v, _k);
}
///
/// Samples a matrix normal distributed random variable.
///
/// The random number generator to use.
/// The mean of the matrix normal.
/// The covariance matrix for the rows.
/// The covariance matrix for the columns.
/// If the dimensions of the mean and two covariance matrices don't match.
/// a sequence of samples from the distribution.
public static Matrix Sample(System.Random rnd, Matrix m, Matrix v, Matrix k)
{
if (Control.CheckDistributionParameters && !IsValidParameterSet(m, v, k))
{
throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters);
}
var n = m.RowCount;
var p = m.ColumnCount;
// Compute the Kronecker product of V and K, this is the covariance matrix for the stacked matrix.
var vki = v.KroneckerProduct(k.Inverse());
// Sample a vector valued random variable with VKi as the covariance.
var vector = SampleVectorNormal(rnd, new DenseVector(n*p), vki);
// Unstack the vector v and add the mean.
var r = m.Clone();
for (var i = 0; i < n; i++)
{
for (var j = 0; j < p; j++)
{
r.At(i, j, r.At(i, j) + vector[(j*n) + i]);
}
}
return r;
}
///
/// Samples a vector normal distributed random variable.
///
/// The random number generator to use.
/// The mean of the vector normal distribution.
/// The covariance matrix of the vector normal distribution.
/// a sequence of samples from defined distribution.
static Vector SampleVectorNormal(System.Random rnd, Vector mean, Matrix covariance)
{
var chol = Cholesky.Create(covariance);
return SampleVectorNormal(rnd, mean, chol);
}
///
/// Samples a vector normal distributed random variable.
///
/// The random number generator to use.
/// The mean of the vector normal distribution.
/// The Cholesky factorization of the covariance matrix.
/// a sequence of samples from defined distribution.
static Vector SampleVectorNormal(System.Random rnd, Vector mean, Cholesky cholesky)
{
var count = mean.Count;
// Sample a standard normal variable.
var v = new DenseVector(count);
for (var d = 0; d < count; d += 2)
{
var sample = Normal.SampleUncheckedBoxMuller(rnd);
v[d] = sample.Item1;
if (d + 1 < count)
{
v[d + 1] = sample.Item2;
}
}
// Return the transformed variable.
return mean + (cholesky.Factor*v);
}
}
}