// // Math.NET Numerics, part of the Math.NET Project // http://numerics.mathdotnet.com // http://github.com/mathnet/mathnet-numerics // http://mathnetnumerics.codeplex.com // // Copyright (c) 2009-2013 Math.NET // // Permission is hereby granted, free of charge, to any person // obtaining a copy of this software and associated documentation // files (the "Software"), to deal in the Software without // restriction, including without limitation the rights to use, // copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the // Software is furnished to do so, subject to the following // conditions: // // The above copyright notice and this permission notice shall be // included in all copies or substantial portions of the Software. // // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, // EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES // OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND // NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT // HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, // WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING // FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR // OTHER DEALINGS IN THE SOFTWARE. // using System; using MathNet.Numerics.LinearAlgebra; using MathNet.Numerics.LinearAlgebra.Double; using MathNet.Numerics.LinearAlgebra.Factorization; using MathNet.Numerics.Properties; namespace MathNet.Numerics.Distributions { /// /// Multivariate Matrix-valued Normal distributions. The distribution /// is parameterized by a mean matrix (M), a covariance matrix for the rows (V) and a covariance matrix /// for the columns (K). If the dimension of M is d-by-m then V is d-by-d and K is m-by-m. /// Wikipedia - MatrixNormal distribution. /// /// The distribution will use the by default. /// Users can set the random number generator by using the property. /// The statistics classes will check all the incoming parameters whether they are in the allowed /// range. This might involve heavy computation. Optionally, by setting Control.CheckDistributionParameters /// to false, all parameter checks can be turned off. public class MatrixNormal { /// /// The mean of the matrix normal distribution. /// Matrix _m; /// /// The covariance matrix for the rows. /// Matrix _v; /// /// The covariance matrix for the columns. /// Matrix _k; /// /// The distribution's random number generator. /// System.Random _random; /// /// Initializes a new instance of the class. /// /// The mean of the matrix normal. /// The covariance matrix for the rows. /// The covariance matrix for the columns. /// If the dimensions of the mean and two covariance matrices don't match. public MatrixNormal(Matrix m, Matrix v, Matrix k) { _random = new System.Random(); SetParameters(m, v, k); } /// /// Initializes a new instance of the class. /// /// The mean of the matrix normal. /// The covariance matrix for the rows. /// The covariance matrix for the columns. /// The random number generator which is used to draw random samples. /// If the dimensions of the mean and two covariance matrices don't match. public MatrixNormal(Matrix m, Matrix v, Matrix k, System.Random randomSource) { _random = randomSource ?? new System.Random(); SetParameters(m, v, k); } /// /// Returns a that represents this instance. /// /// /// A that represents this instance. /// public override string ToString() { return "MatrixNormal(Rows = " + _m.RowCount + ", Columns = " + _m.ColumnCount + ")"; } /// /// Gets or sets the mean. (M) /// /// The mean of the distribution. public Matrix Mean { get { return _m; } set { SetParameters(value, _v, _k); } } /// /// Gets or sets the row covariance. (V) /// /// The row covariance. public Matrix RowCovariance { get { return _v; } set { SetParameters(_m, value, _k); } } /// /// Gets or sets the column covariance. (K) /// /// The column covariance. public Matrix ColumnCovariance { get { return _k; } set { SetParameters(_m, _v, value); } } /// /// Sets the parameters of the distribution after checking their validity. /// /// The mean of the matrix normal. /// The covariance matrix for the rows. /// The covariance matrix for the columns. /// When the parameters don't pass the function. void SetParameters(Matrix m, Matrix v, Matrix k) { if (Control.CheckDistributionParameters && !IsValidParameterSet(m, v, k)) { throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters); } _m = m; _v = v; _k = k; } /// /// Checks whether the parameters of the distribution are valid. /// /// The mean of the matrix normal. /// The covariance matrix for the rows. /// The covariance matrix for the columns. /// true when the parameters are valid, false otherwise. static bool IsValidParameterSet(Matrix m, Matrix v, Matrix k) { var n = m.RowCount; var p = m.ColumnCount; if (v.ColumnCount != n || v.RowCount != n) { return false; } if (k.ColumnCount != p || k.RowCount != p) { return false; } for (var i = 0; i < v.RowCount; i++) { if (v.At(i, i) <= 0) { return false; } } for (var i = 0; i < k.RowCount; i++) { if (k.At(i, i) <= 0) { return false; } } return true; } /// /// Gets or sets the random number generator which is used to draw random samples. /// public System.Random RandomSource { get { return _random; } set { if (value == null) { throw new ArgumentNullException(); } _random = value; } } /// /// Evaluates the probability density function for the matrix normal distribution. /// /// The matrix at which to evaluate the density at. /// the density at /// If the argument does not have the correct dimensions. public double Density(Matrix x) { if (x.RowCount != _m.RowCount || x.ColumnCount != _m.ColumnCount) { throw Matrix.DimensionsDontMatch(x, _m, "x"); } var a = x - _m; var cholV = Cholesky.Create(_v); var cholK = Cholesky.Create(_k); return Math.Exp(-0.5*cholV.Solve(a.Transpose()*cholK.Solve(a)).Trace()) /Math.Pow(2.0*Constants.Pi, x.RowCount*x.ColumnCount/2.0) /Math.Pow(cholV.Determinant, x.RowCount/2.0) /Math.Pow(cholK.Determinant, x.ColumnCount/2.0); } /// /// Samples a matrix normal distributed random variable. /// /// A random number from this distribution. public Matrix Sample() { return Sample(RandomSource, _m, _v, _k); } /// /// Samples a matrix normal distributed random variable. /// /// The random number generator to use. /// The mean of the matrix normal. /// The covariance matrix for the rows. /// The covariance matrix for the columns. /// If the dimensions of the mean and two covariance matrices don't match. /// a sequence of samples from the distribution. public static Matrix Sample(System.Random rnd, Matrix m, Matrix v, Matrix k) { if (Control.CheckDistributionParameters && !IsValidParameterSet(m, v, k)) { throw new ArgumentOutOfRangeException(Resources.InvalidDistributionParameters); } var n = m.RowCount; var p = m.ColumnCount; // Compute the Kronecker product of V and K, this is the covariance matrix for the stacked matrix. var vki = v.KroneckerProduct(k.Inverse()); // Sample a vector valued random variable with VKi as the covariance. var vector = SampleVectorNormal(rnd, new DenseVector(n*p), vki); // Unstack the vector v and add the mean. var r = m.Clone(); for (var i = 0; i < n; i++) { for (var j = 0; j < p; j++) { r.At(i, j, r.At(i, j) + vector[(j*n) + i]); } } return r; } /// /// Samples a vector normal distributed random variable. /// /// The random number generator to use. /// The mean of the vector normal distribution. /// The covariance matrix of the vector normal distribution. /// a sequence of samples from defined distribution. static Vector SampleVectorNormal(System.Random rnd, Vector mean, Matrix covariance) { var chol = Cholesky.Create(covariance); return SampleVectorNormal(rnd, mean, chol); } /// /// Samples a vector normal distributed random variable. /// /// The random number generator to use. /// The mean of the vector normal distribution. /// The Cholesky factorization of the covariance matrix. /// a sequence of samples from defined distribution. static Vector SampleVectorNormal(System.Random rnd, Vector mean, Cholesky cholesky) { var count = mean.Count; // Sample a standard normal variable. var v = new DenseVector(count); for (var d = 0; d < count; d += 2) { var sample = Normal.SampleUncheckedBoxMuller(rnd); v[d] = sample.Item1; if (d + 1 < count) { v[d + 1] = sample.Item2; } } // Return the transformed variable. return mean + (cholesky.Factor*v); } } }